OpenCompass/opencompass/utils/fileio.py
Songyang Zhang c81329b548
[Fix] Fix Slurm ENV (#1392)
1. Support Slurm Cluster
2. Support automatic data download
3. Update InternLM2.5-1.8B/20B-Chat
2024-08-06 01:35:20 +08:00

379 lines
12 KiB
Python

import gzip
import hashlib
import io
import os
import os.path
import shutil
import tarfile
import tempfile
import urllib.error
import urllib.request
import zipfile
from contextlib import contextmanager
import mmengine.fileio as fileio
from mmengine.fileio import LocalBackend, get_file_backend
def patch_func(module, fn_name_to_wrap):
backup = getattr(patch_func, '_backup', [])
fn_to_wrap = getattr(module, fn_name_to_wrap)
def wrap(fn_new):
setattr(module, fn_name_to_wrap, fn_new)
backup.append((module, fn_name_to_wrap, fn_to_wrap))
setattr(fn_new, '_fallback', fn_to_wrap)
setattr(patch_func, '_backup', backup)
return fn_new
return wrap
@contextmanager
def patch_fileio(global_vars=None):
if getattr(patch_fileio, '_patched', False):
# Only patch once, avoid error caused by patch nestly.
yield
return
import builtins
@patch_func(builtins, 'open')
def open(file, mode='r', *args, **kwargs):
backend = get_file_backend(file)
if isinstance(backend, LocalBackend):
return open._fallback(file, mode, *args, **kwargs)
if 'b' in mode:
return io.BytesIO(backend.get(file, *args, **kwargs))
else:
return io.StringIO(backend.get_text(file, *args, **kwargs))
if global_vars is not None and 'open' in global_vars:
bak_open = global_vars['open']
global_vars['open'] = builtins.open
import os
@patch_func(os.path, 'join')
def join(a, *paths):
backend = get_file_backend(a)
if isinstance(backend, LocalBackend):
return join._fallback(a, *paths)
paths = [item for item in paths if len(item) > 0]
return backend.join_path(a, *paths)
@patch_func(os.path, 'isdir')
def isdir(path):
backend = get_file_backend(path)
if isinstance(backend, LocalBackend):
return isdir._fallback(path)
return backend.isdir(path)
@patch_func(os.path, 'isfile')
def isfile(path):
backend = get_file_backend(path)
if isinstance(backend, LocalBackend):
return isfile._fallback(path)
return backend.isfile(path)
@patch_func(os.path, 'exists')
def exists(path):
backend = get_file_backend(path)
if isinstance(backend, LocalBackend):
return exists._fallback(path)
return backend.exists(path)
@patch_func(os, 'listdir')
def listdir(path):
backend = get_file_backend(path)
if isinstance(backend, LocalBackend):
return listdir._fallback(path)
return backend.list_dir_or_file(path)
import filecmp
@patch_func(filecmp, 'cmp')
def cmp(f1, f2, *args, **kwargs):
with fileio.get_local_path(f1) as f1, fileio.get_local_path(f2) as f2:
return cmp._fallback(f1, f2, *args, **kwargs)
import shutil
@patch_func(shutil, 'copy')
def copy(src, dst, **kwargs):
backend = get_file_backend(src)
if isinstance(backend, LocalBackend):
return copy._fallback(src, dst, **kwargs)
return backend.copyfile_to_local(str(src), str(dst))
import torch
@patch_func(torch, 'load')
def load(f, *args, **kwargs):
if isinstance(f, str):
f = io.BytesIO(fileio.get(f))
return load._fallback(f, *args, **kwargs)
try:
setattr(patch_fileio, '_patched', True)
yield
finally:
for patched_fn in patch_func._backup:
(module, fn_name_to_wrap, fn_to_wrap) = patched_fn
setattr(module, fn_name_to_wrap, fn_to_wrap)
if global_vars is not None and 'open' in global_vars:
global_vars['open'] = bak_open
setattr(patch_fileio, '_patched', False)
def patch_hf_auto_model(cache_dir=None):
if hasattr('patch_hf_auto_model', '_patched'):
return
from transformers.modeling_utils import PreTrainedModel
from transformers.models.auto.auto_factory import _BaseAutoModelClass
ori_model_pt = PreTrainedModel.from_pretrained
@classmethod
def model_pt(cls, pretrained_model_name_or_path, *args, **kwargs):
kwargs['cache_dir'] = cache_dir
if not isinstance(get_file_backend(pretrained_model_name_or_path),
LocalBackend):
kwargs['local_files_only'] = True
if cache_dir is not None and not isinstance(
get_file_backend(cache_dir), LocalBackend):
kwargs['local_files_only'] = True
with patch_fileio():
res = ori_model_pt.__func__(cls, pretrained_model_name_or_path,
*args, **kwargs)
return res
PreTrainedModel.from_pretrained = model_pt
# transformers copied the `from_pretrained` to all subclasses,
# so we have to modify all classes
for auto_class in [
_BaseAutoModelClass, *_BaseAutoModelClass.__subclasses__()
]:
ori_auto_pt = auto_class.from_pretrained
@classmethod
def auto_pt(cls, pretrained_model_name_or_path, *args, **kwargs):
kwargs['cache_dir'] = cache_dir
if not isinstance(get_file_backend(pretrained_model_name_or_path),
LocalBackend):
kwargs['local_files_only'] = True
if cache_dir is not None and not isinstance(
get_file_backend(cache_dir), LocalBackend):
kwargs['local_files_only'] = True
with patch_fileio():
res = ori_auto_pt.__func__(cls, pretrained_model_name_or_path,
*args, **kwargs)
return res
auto_class.from_pretrained = auto_pt
patch_hf_auto_model._patched = True
def calculate_md5(fpath: str, chunk_size: int = 1024 * 1024):
md5 = hashlib.md5()
backend = get_file_backend(fpath, enable_singleton=True)
if isinstance(backend, LocalBackend):
# Enable chunk update for local file.
with open(fpath, 'rb') as f:
for chunk in iter(lambda: f.read(chunk_size), b''):
md5.update(chunk)
else:
md5.update(backend.get(fpath))
return md5.hexdigest()
def check_md5(fpath, md5, **kwargs):
return md5 == calculate_md5(fpath, **kwargs)
def check_integrity(fpath, md5=None):
if not os.path.isfile(fpath):
return False
if md5 is None:
return True
return check_md5(fpath, md5)
def download_url_to_file(url, dst, hash_prefix=None, progress=True):
"""Download object at the given URL to a local path.
Modified from
https://pytorch.org/docs/stable/hub.html#torch.hub.download_url_to_file
Args:
url (str): URL of the object to download
dst (str): Full path where object will be saved,
e.g. ``/tmp/temporary_file``
hash_prefix (string, optional): If not None, the SHA256 downloaded
file should start with ``hash_prefix``. Defaults to None.
progress (bool): whether or not to display a progress bar to stderr.
Defaults to True
"""
file_size = None
req = urllib.request.Request(url)
u = urllib.request.urlopen(req)
meta = u.info()
if hasattr(meta, 'getheaders'):
content_length = meta.getheaders('Content-Length')
else:
content_length = meta.get_all('Content-Length')
if content_length is not None and len(content_length) > 0:
file_size = int(content_length[0])
# We deliberately save it in a temp file and move it after download is
# complete. This prevents a local file being overridden by a broken
# download.
dst = os.path.expanduser(dst)
dst_dir = os.path.dirname(dst)
f = tempfile.NamedTemporaryFile(delete=False, dir=dst_dir)
import rich.progress
columns = [
rich.progress.DownloadColumn(),
rich.progress.BarColumn(bar_width=None),
rich.progress.TimeRemainingColumn(),
]
try:
if hash_prefix is not None:
sha256 = hashlib.sha256()
with rich.progress.Progress(*columns) as pbar:
task = pbar.add_task('download', total=file_size, visible=progress)
while True:
buffer = u.read(8192)
if len(buffer) == 0:
break
f.write(buffer)
if hash_prefix is not None:
sha256.update(buffer)
pbar.update(task, advance=len(buffer))
f.close()
if hash_prefix is not None:
digest = sha256.hexdigest()
if digest[:len(hash_prefix)] != hash_prefix:
raise RuntimeError(
'invalid hash value (expected "{}", got "{}")'.format(
hash_prefix, digest))
shutil.move(f.name, dst)
finally:
f.close()
if os.path.exists(f.name):
os.remove(f.name)
def download_url(url, root, filename=None, md5=None):
"""Download a file from a url and place it in root.
Args:
url (str): URL to download file from.
root (str): Directory to place downloaded file in.
filename (str | None): Name to save the file under.
If filename is None, use the basename of the URL.
md5 (str | None): MD5 checksum of the download.
If md5 is None, download without md5 check.
"""
root = os.path.expanduser(root)
if not filename:
filename = os.path.basename(url)
fpath = os.path.join(root, filename)
os.makedirs(root, exist_ok=True)
if check_integrity(fpath, md5):
print(f'Using downloaded and verified file: {fpath}')
else:
try:
print(f'Downloading {url} to {fpath}')
download_url_to_file(url, fpath)
except (urllib.error.URLError, IOError) as e:
if url[:5] == 'https':
url = url.replace('https:', 'http:')
print('Failed download. Trying https -> http instead.'
f' Downloading {url} to {fpath}')
download_url_to_file(url, fpath)
else:
raise e
# check integrity of downloaded file
if not check_integrity(fpath, md5):
raise RuntimeError('File not found or corrupted.')
def _is_tarxz(filename):
return filename.endswith('.tar.xz')
def _is_tar(filename):
return filename.endswith('.tar')
def _is_targz(filename):
return filename.endswith('.tar.gz')
def _is_tgz(filename):
return filename.endswith('.tgz')
def _is_gzip(filename):
return filename.endswith('.gz') and not filename.endswith('.tar.gz')
def _is_zip(filename):
return filename.endswith('.zip')
def extract_archive(from_path, to_path=None, remove_finished=False):
if to_path is None:
to_path = os.path.dirname(from_path)
if _is_tar(from_path):
with tarfile.open(from_path, 'r') as tar:
tar.extractall(path=to_path)
elif _is_targz(from_path) or _is_tgz(from_path):
with tarfile.open(from_path, 'r:gz') as tar:
tar.extractall(path=to_path)
elif _is_tarxz(from_path):
with tarfile.open(from_path, 'r:xz') as tar:
tar.extractall(path=to_path)
elif _is_gzip(from_path):
to_path = os.path.join(
to_path,
os.path.splitext(os.path.basename(from_path))[0])
with open(to_path, 'wb') as out_f, gzip.GzipFile(from_path) as zip_f:
out_f.write(zip_f.read())
elif _is_zip(from_path):
with zipfile.ZipFile(from_path, 'r') as z:
z.extractall(to_path)
else:
raise ValueError(f'Extraction of {from_path} not supported')
if remove_finished:
os.remove(from_path)
def download_and_extract_archive(url,
download_root,
extract_root=None,
filename=None,
md5=None,
remove_finished=False):
download_root = os.path.expanduser(download_root)
if extract_root is None:
extract_root = download_root
if not filename:
filename = os.path.basename(url)
download_url(url, download_root, filename, md5)
archive = os.path.join(download_root, filename)
print(f'Extracting {archive} to {extract_root}')
extract_archive(archive, extract_root, remove_finished)