OpenCompass/opencompass/datasets/CARDBiomedBench.py
2025-05-02 12:55:47 +00:00

108 lines
3.2 KiB
Python

import re
from datasets import Dataset, load_dataset
from opencompass.openicl import BaseEvaluator
from opencompass.registry import LOAD_DATASET, TEXT_POSTPROCESSORS
from opencompass.utils import get_logger
from .base import BaseDataset
def _parse(item, prompt_mode):
item['expert'] = item['Bio_Category']
item['start'] = chr(65)
item['end'] = chr(65 + len(item.get('choices', {'label': []})['label']) -
1)
item['prompt_mode'] = prompt_mode
return item
@LOAD_DATASET.register_module()
class CARDBiomedBenchDataset(BaseDataset):
@staticmethod
def load(path: str, prompt_mode: str, **kwargs):
data_files = {'test': 'data/CARDBiomedBench.csv'}
dataset = load_dataset(path, data_files=data_files, split='test')
# dataset = dataset.select(range(200))
if prompt_mode == 'zero-shot':
dataset = dataset.map(lambda item: _parse(item, prompt_mode),
load_from_cache_file=False)
elif prompt_mode == 'few-shot':
pass # TODO: Implement few-shot prompt
return dataset
def _generic_llmjudge_postprocess(judgement: str):
match = re.search(r'(A|B)', judgement)
grade_letter = (match.group(0) if match else 'B'
) # Default to "INCORRECT" if no match
return grade_letter
def CARDBiomedBench_llmjudge_postprocess(
output: dict,
output_path: str,
dataset: Dataset,
) -> dict:
# Get the original dataset
original_dataset = dataset.reader.dataset['test']
judged_answers = []
original_responses = []
references = []
details = []
total_correct = 0
total_count = 0
for k, v in output.items():
idx = int(k) # Convert key to integer for indexing
original_responses.append(v['prediction'])
processed_judge = _generic_llmjudge_postprocess(v['prediction'])
sample = original_dataset[idx]
# Record the judgment
if processed_judge is not None:
judged_answers.append(processed_judge)
try:
gold = v['gold']
references.append(gold)
except KeyError:
get_logger().warning(
f'No gold answer for {k}, use empty string as reference!')
gold = ''
references.append('')
# Check if the answer is correct (A means correct)
is_correct = processed_judge == 'A'
total_count += 1
if is_correct:
total_correct += 1
# Add to details
details.append({
'id': k,
'question': sample['question'],
'prediction': sample['prediction'],
'origin_prompt': v['origin_prompt'],
'llm_judge': processed_judge,
'gold': gold,
'is_correct': is_correct,
})
# Calculate overall accuracy with two decimal places
overall_accuracy = (round(
(total_correct / total_count * 100), 2) if total_count > 0 else 0.00)
# Initialize results dictionary
results = {
'accuracy': overall_accuracy,
'total_correct': total_correct,
'total_count': total_count,
'details': details,
}
return results