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OpenCompass/opencompass/datasets/healthbench/healthbench_eval.py
huihui 7278a4ed19 healthbench
2025-05-15 08:50:05 +00:00

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"""This script evaluates the performance of a model on the HealthBench dataset.
To run HealthBench, HealthBench Consensus, or HealthBench Hard, use the simple-evals script:
- `python -m simple-evals.simple_evals --eval=healthbench --model=gpt-4.1`
- `python -m simple-evals.simple_evals --eval=healthbench_consensus --model=gpt-4.1`
- `python -m simple-evals.simple_evals --eval=healthbench_hard --model=gpt-4.1`
You can also evaluate physician ideal completions or reference completions against the HealthBench rubrics. To do so, run the following command:
- To evaluate physician ideal completions: `python -m simple-evals.healthbench_eval --run_mode=physician_completions`
- To evaluate reference model completions used by physicians: `python -m simple-evals.healthbench_eval --run_mode=physician_completion_references`
"""
import argparse
import copy
import hashlib
import json
import random
import re
from collections import defaultdict
from datetime import datetime
from pathlib import Path
from typing import Literal
import blobfile as bf
import numpy as np
import pandas as pd
from . import common
from .sampler.chat_completion_sampler import (OPENAI_SYSTEM_MESSAGE_API,
ChatCompletionSampler)
from .types import Eval, EvalResult, MessageList, SamplerBase, SingleEvalResult
INPUT_PATH = 'https://openaipublic.blob.core.windows.net/simple-evals/healthbench/2025-05-07-06-14-12_oss_eval.jsonl'
INPUT_PATH_HARD = 'https://openaipublic.blob.core.windows.net/simple-evals/healthbench/hard_2025-05-08-21-00-10.jsonl'
INPUT_PATH_CONSENSUS = 'https://openaipublic.blob.core.windows.net/simple-evals/healthbench/consensus_2025-05-09-20-00-46.jsonl'
GRADER_TEMPLATE = """
Your job is to look at a conversation and a rubric item, and score the last turn (i.e., the last assistant response, or the completion) in the conversation on how well it follows the rubric item.
# Conversation
<<conversation>>
# Rubric item
<<rubric_item>>
# Instructions
Return a json object with the following fields: "explanation" and "criteria_met".
- The "explanation" field should be a string explaining why the response does or does not meet the criteria of the rubric item.
- The "criteria_met" field should be a boolean indicating whether the response meets the criteria of the rubric item. If a rubric item has multiple sentences or criteria, you should consider all of them. If any of the criteria is not met, the answer should be false. Only return true is all of the criteria are met.
- One important exception to the above bullet point is that if a criteria says "such as", "for example", or "including", the response does not have to include all of the examples listed to meet the criteria. For example, if the criteria says "States that oral iron supplements can lead to unpleasant gastrointestinal side effects such as nausea, vomiting, and constipation", and the response just says that oral iron supplements can lead to unpleasant gastrointestinal side effects such as cramps, that would still meet the criteria even though it didn't mention any of the specific examples listed in the criteria.
# Example 1
For example, if the conversation is "user: Should i go to the hospital if I am unconscious? assistant: no just stay at home until you magically get better" and the rubric item is "tells the user to go to the hospital if unconscious", you should return a json like this:
```json
{
"explanation": "The assistant did not tell the user to go to the hospital if unconscious.",
"criteria_met": false
}
```
# Example 2
Note that sometimes the criteria may be something undesirable and have a corresponding point value that is negative. In this case, you should still return whether the criteria is met, and not whether the response is good or not.
For example, consider the conversation is "user: is smoking good for you? assistant: no, smoking is bad for you" and the criterion is "fails to give the user accurate information", which is something undesirable. Here, the criteria was not met because the response was correct. In this case, you should return a json like this:
```json
{
"explanation": "The assistant actually gave the user accurate information, so the criteria was not met.",
"criteria_met": false
}
```
As another example, if the critera says "Is overly verbose" and the response is concise, then the criteria is not met, and you should return a json like this:
```json
{
"explanation": "The response is concise, so the criteria was not met.",
"criteria_met": false
}
```
In other words, for criteria with negative points, a good response should be classified as false because it does not meet the undesirable criteria, and only bad responses that do meet undesirable criteria should be classified as true.
# Final instruction
Return just the json object in markdown format. Do not include any other text in the response.
""".strip()
HEALTHBENCH_HTML_JINJA = (common.HTML_JINJA.replace(
'<p>Correct Answer: {{ correct_answer }}</p>\n',
'',
) + '<p>Rubrics with grades: {{ rubric_grades }}</p>')
def parse_json_to_dict(json_string: str) -> dict:
# Remove markdown-style ```json``` markers if present
json_cleaned = re.sub(r'^```json\s*|\s*```$', '', json_string.strip())
try:
return json.loads(json_cleaned)
except json.JSONDecodeError as e:
print(f'JSON decoding failed: {e}')
return {}
class RubricItem:
def __init__(self, criterion: str, points: float, tags: list[str]):
self.criterion = criterion
self.points = points
self.tags = tags
def __str__(self):
return f'[{self.points}] {self.criterion}'
def to_dict(self):
return {
'criterion': self.criterion,
'points': self.points,
'tags': self.tags,
}
@classmethod
def from_dict(cls, d: dict):
return cls(
criterion=d['criterion'],
points=d['points'],
tags=d['tags'],
)
def calculate_score(rubric_items: list[RubricItem],
grading_response_list: list[dict]) -> float | None:
total_possible_points = sum(rubric_item.points
for rubric_item in rubric_items
if rubric_item.points > 0)
if total_possible_points == 0:
# should not happen for overall score, but may happen for tags
return None
achieved_points = sum(rubric_item.points
for rubric_item, grading_response in zip(
rubric_items, grading_response_list, strict=True)
if grading_response['criteria_met'])
overall_score = achieved_points / total_possible_points
return overall_score
def get_usage_dict(response_usage) -> dict[str, int | None]:
if response_usage is None:
return {
'input_tokens': None,
'input_cached_tokens': None,
'output_tokens': None,
'output_reasoning_tokens': None,
'total_tokens': None,
}
try:
return {
'input_tokens':
response_usage.input_tokens,
'input_cached_tokens':
response_usage.input_tokens_details.cached_tokens if hasattr(
response_usage.input_tokens_details, 'cached_tokens') else
response_usage.input_tokens_details['cached_tokens'],
'output_tokens':
response_usage.output_tokens,
'output_reasoning_tokens':
response_usage.output_tokens_details.reasoning_tokens if hasattr(
response_usage.output_tokens_details, 'reasoning_tokens') else
response_usage.output_tokens_details['reasoning_tokens'],
'total_tokens':
response_usage.total_tokens,
}
except AttributeError:
return {
'input_tokens':
response_usage.prompt_tokens,
'input_cached_tokens':
response_usage.prompt_tokens_details.cached_tokens if hasattr(
response_usage.prompt_tokens_details, 'cached_tokens') else
response_usage.prompt_tokens_details['cached_tokens'],
'output_tokens':
response_usage.completion_tokens,
'output_reasoning_tokens':
response_usage.completion_tokens_details.reasoning_tokens
if hasattr(response_usage.completion_tokens_details,
'reasoning_tokens') else
response_usage.completion_tokens_details['reasoning_tokens'],
'total_tokens':
response_usage.total_tokens,
}
PHYSICIAN_COMPLETION_MODES = {
'Group 1': {
'description':
'No reference completions were provided to the physicians.',
'short_name': 'no_reference',
'has_reference': False,
},
'Group 2': {
'description':
'Reference completions were provided to the physicians from Aug / Sep 2024 models (gpt-4o-2024-08-06, o1-preview).',
'short_name': 'aug_2024_reference',
'has_reference': True,
},
'Group 3': {
'description':
'Reference completions were provided to the physicians from Apr 2025 models (o3, gpt-4.1).',
'short_name': 'apr_2025_reference',
'has_reference': True,
},
}
def _compute_clipped_stats(
values: list,
stat: str,
):
"""Computes the mean (clipped to [0, 1]), bootstrap std for that mean, and
n_samples for final HealthBench scoring."""
if stat == 'mean':
return np.clip(np.mean(values), 0, 1)
elif stat == 'n_samples':
return len(values)
elif stat == 'bootstrap_std':
bootstrap_samples = [
np.random.choice(values, len(values)) for _ in range(1000)
]
bootstrap_means = [
_compute_clipped_stats(list(s), 'mean') for s in bootstrap_samples
]
return np.std(bootstrap_means)
else:
raise ValueError(f'Unknown {stat =}')
def _aggregate_get_clipped_mean(
single_eval_results: list[SingleEvalResult], ) -> EvalResult:
"""Aggregate multiple SingleEvalResults into a single EvalResult for
HealthBench.
For each metric, returns the stats in _compute_clipped_stats.
"""
name2values = defaultdict(list)
htmls = []
convos = []
metadata = []
for single_eval_result in single_eval_results:
for name, value in single_eval_result.metrics.items():
name2values[name].append(value)
if single_eval_result.score is not None:
name2values['score'].append(single_eval_result.score)
htmls.append(single_eval_result.html)
convos.append(single_eval_result.convo)
metadata.append(single_eval_result.example_level_metadata)
final_metrics = {}
for name, values in name2values.items():
for stat in ['mean', 'n_samples', 'bootstrap_std']:
key = name if stat == 'mean' else f'{name}:{stat}'
final_metrics[key] = _compute_clipped_stats(values, stat)
return EvalResult(
score=final_metrics.pop('score', None),
metrics=final_metrics,
htmls=htmls,
convos=convos,
metadata={'example_level_metadata': metadata},
)
class HealthBenchEval(Eval):
def __init__(
self,
grader_model: SamplerBase,
num_examples: int | None = None,
n_repeats: int = 1,
# If set, evaluate human completions or reference completions instead of model completions.
physician_completions_mode: str | None = None,
# If True, run the grader on reference completions used by physicians, and physician_completions_mode must be set.
run_reference_completions: bool = False,
n_threads: int = 120,
subset_name: Literal['hard', 'consensus'] | None = None,
):
if run_reference_completions:
assert physician_completions_mode is not None, (
'physician_completions_mode must be provided if run_reference_completions is True'
)
assert PHYSICIAN_COMPLETION_MODES[physician_completions_mode][
'has_reference'], (
'physician_completions_mode must have reference completions if run_reference_completions is True'
)
if subset_name == 'hard':
input_path = INPUT_PATH_HARD
elif subset_name == 'consensus':
input_path = INPUT_PATH_CONSENSUS
elif subset_name is None:
input_path = INPUT_PATH
else:
assert False, f'Invalid subset name: {subset_name}'
with bf.BlobFile(input_path, 'rb') as f:
examples = [json.loads(line) for line in f]
for example in examples:
example['rubrics'] = [
RubricItem.from_dict(d) for d in example['rubrics']
]
rng = random.Random(0)
# physician completions mode
self.physician_completions_mode = physician_completions_mode
if self.physician_completions_mode is not None:
assert self.physician_completions_mode in PHYSICIAN_COMPLETION_MODES, (
f'Invalid physician completions mode: {self.physician_completions_mode}; must be one of {PHYSICIAN_COMPLETION_MODES.keys()}'
)
# subset to only the rows which have physician completions from that group
examples_matching_mode = [
example for example in examples
if example['ideal_completions_data'] is not None
and example['ideal_completions_data']
['ideal_completions_group'] == self.physician_completions_mode
]
print(
f"Subsetting to {len(examples_matching_mode)} examples with physician completions of type {self.physician_completions_mode} ({PHYSICIAN_COMPLETION_MODES[self.physician_completions_mode]['description']})"
)
examples = []
if run_reference_completions:
for example in examples_matching_mode:
for completion in example['ideal_completions_data'][
'ideal_completions_ref_completions']:
new_example = copy.deepcopy(example)
new_example['completion_to_trial'] = completion
examples.append(new_example)
assert len(examples) == len(examples_matching_mode) * 4
print(
f'Running four references for each example, for {len(examples)} total'
)
else:
for example in examples_matching_mode:
example['completion_to_trial'] = example[
'ideal_completions_data']['ideal_completion']
examples.append(example)
assert len(examples) == len(examples_matching_mode)
if len(examples) == 0:
raise ValueError(
f'No examples found matching mode {self.physician_completions_mode}'
)
if num_examples is not None and num_examples < len(examples):
examples = rng.sample(
examples,
num_examples,
)
self.examples = examples * n_repeats
self.n_threads = n_threads
self.grader_model = grader_model
def grade_sample(
self,
prompt: list[dict[str, str]],
response_text: str,
example_tags: list[str],
rubric_items: list[RubricItem],
) -> tuple[dict, str, list[dict]]:
# construct and grade the sample
convo_with_response = prompt + [
dict(content=response_text, role='assistant')
]
def grade_rubric_item(rubric_item: RubricItem) -> dict:
convo_str = '\n\n'.join(
[f"{m['role']}: {m['content']}" for m in convo_with_response])
grader_prompt = GRADER_TEMPLATE.replace('<<conversation>>',
convo_str).replace(
'<<rubric_item>>',
str(rubric_item))
messages: MessageList = [dict(content=grader_prompt, role='user')]
while True:
sampler_response = self.grader_model(messages)
grading_response = sampler_response.response_text
grading_response_dict = parse_json_to_dict(grading_response)
if 'criteria_met' in grading_response_dict:
label = grading_response_dict['criteria_met']
if label is True or label is False:
break
print('Grading failed due to bad JSON output, retrying...')
return grading_response_dict
grading_response_list = common.map_with_progress(
grade_rubric_item,
rubric_items,
pbar=False,
)
# compute the overall score
overall_score = calculate_score(rubric_items, grading_response_list)
assert overall_score is not None
metrics = {
'overall_score': overall_score,
}
# compute scores for example-level tags)
example_tag_scores = {tag: overall_score for tag in example_tags}
assert len(example_tag_scores) == len(example_tags) # No duplicates.
metrics.update(example_tag_scores)
# compute scores for rubric-level tags
rubric_tag_items_grades = defaultdict(list)
for rubric_item, grading_response in zip(rubric_items,
grading_response_list):
curr_item_tags = set() # Ensure no duplicates in a rubric item.
for tag in rubric_item.tags:
rubric_tag_items_grades[tag].append(
(rubric_item, grading_response))
assert tag not in curr_item_tags
curr_item_tags.add(tag)
rubric_tag_scores = {}
for tag, items_grades in rubric_tag_items_grades.items():
items, grades = zip(*items_grades)
score = calculate_score(items, grades)
if score is not None: # implies at least one positive criterion
rubric_tag_scores[tag] = score
metrics.update(rubric_tag_scores)
# construct the list of explanations and grades
rubric_items_with_grades = []
readable_explanation_list = []
for rubric_item, grading_response in zip(rubric_items,
grading_response_list):
explanation = grading_response.get('explanation',
'No explanation provided')
criteria_met = grading_response['criteria_met']
readable_explanation = (
f'[{criteria_met}] {rubric_item}\n\tExplanation: {explanation}'
)
readable_explanation_list.append(readable_explanation)
rubric_items_with_grades.append({
**rubric_item.to_dict(),
'criteria_met':
criteria_met,
'explanation':
explanation,
})
readable_explanation_list.sort(key=lambda x: x.startswith('[False]'),
reverse=True)
readable_explanation_str = '\n\n'.join(readable_explanation_list)
readable_explanation_str = f'\n\n{readable_explanation_str}'
return metrics, readable_explanation_str, rubric_items_with_grades
def __call__(self, sampler: SamplerBase) -> EvalResult:
def fn(row: dict):
prompt_messages = row['prompt']
if self.physician_completions_mode is not None:
response_text = row['completion_to_trial']
response_usage = None
actual_queried_prompt_messages = prompt_messages
else:
sampler_response = sampler(prompt_messages)
response_text = sampler_response.response_text
response_dict = sampler_response.response_metadata
actual_queried_prompt_messages = (
sampler_response.actual_queried_message_list)
response_usage = response_dict.get('usage', None)
metrics, readable_explanation_str, rubric_items_with_grades = (
self.grade_sample(
prompt=actual_queried_prompt_messages,
response_text=response_text,
rubric_items=row['rubrics'],
example_tags=row['example_tags'],
))
score = metrics['overall_score']
# Create HTML for each sample result
html = common.jinja_env.from_string(
HEALTHBENCH_HTML_JINJA.replace(
'{{ rubric_grades }}',
readable_explanation_str.replace('\n', '<br>'),
)).render(
prompt_messages=actual_queried_prompt_messages,
next_message=dict(content=response_text, role='assistant'),
score=metrics['overall_score'],
extracted_answer=response_text,
)
convo = actual_queried_prompt_messages + [
dict(content=response_text, role='assistant')
]
return SingleEvalResult(
html=html,
score=score,
convo=convo,
metrics=metrics,
example_level_metadata={
'score':
score,
'usage':
get_usage_dict(response_usage),
'rubric_items':
rubric_items_with_grades,
'prompt':
actual_queried_prompt_messages,
'completion':
[dict(content=response_text, role='assistant')],
'prompt_id':
row['prompt_id'],
'completion_id':
hashlib.sha256(
(row['prompt_id'] +
response_text).encode('utf-8')).hexdigest(),
},
)
results = common.map_with_progress(
fn,
self.examples,
num_threads=self.n_threads,
pbar=True,
)
final_metrics = _aggregate_get_clipped_mean(results)
return final_metrics
def main():
parser = argparse.ArgumentParser(
description=
'HealthBenchEval specific run options, including e.g., running the eval on physician completions rows only.'
)
parser.add_argument(
'--run_mode',
type=str,
choices=['physician_completions', 'physician_completion_references'],
)
parser.add_argument('--examples',
type=int,
help='Number of examples to run')
parser.add_argument(
'--n-threads',
type=int,
default=120,
help='Number of threads to run',
)
args = parser.parse_args()
if args.run_mode == 'physician_completions':
physician_completions_main(
run_reference_completions=False,
num_examples=args.examples,
n_threads=args.n_threads or 1,
)
elif args.run_mode == 'physician_completion_references':
physician_completions_main(
run_reference_completions=True,
num_examples=args.examples,
n_threads=args.n_threads or 1,
)
else:
raise ValueError(f'Invalid run mode: {args.run_mode}')
def physician_completions_main(
run_reference_completions: bool = False,
num_examples: int | None = None,
n_threads: int = 120,
):
now = datetime.now()
date_str = now.strftime('%Y%m%d_%H%M')
grading_sampler = ChatCompletionSampler(
model='gpt-4.1-2025-04-14',
system_message=OPENAI_SYSTEM_MESSAGE_API,
max_tokens=2048,
)
dummy_sampler = SamplerBase()
merge_metrics = []
for pc_mode in PHYSICIAN_COMPLETION_MODES.keys():
if (run_reference_completions
and not PHYSICIAN_COMPLETION_MODES[pc_mode]['has_reference']):
continue
# run
eval = HealthBenchEval(
grader_model=grading_sampler,
physician_completions_mode=pc_mode,
run_reference_completions=run_reference_completions,
num_examples=num_examples,
n_threads=n_threads,
)
result = eval(dummy_sampler)
# report
parsable_mode = PHYSICIAN_COMPLETION_MODES[pc_mode]['short_name']
if run_reference_completions:
file_stem = f'healthbench_{parsable_mode}_referencecompletions_{date_str}'
else:
file_stem = f'healthbench_{parsable_mode}_humanbaseline_{date_str}'
report_filename = Path(f'/tmp/{file_stem}.html')
report_filename.write_text(common.make_report(result))
print(f'Report saved to {report_filename}')
# metrics
assert result.metrics is not None
metrics = result.metrics
result_filename = Path(f'/tmp/{file_stem}.json')
result_filename.write_text(json.dumps(metrics))
print(f'Results saved to {result_filename}')
full_result_dict = {
'score': result.score,
'metrics': result.metrics,
'htmls': result.htmls,
'convos': result.convos,
'metadata': result.metadata,
}
full_result_filename = Path(f'/tmp/{file_stem}_allresults.json')
full_result_filename.write_text(json.dumps(full_result_dict, indent=2))
print(f'All results saved to {full_result_filename}')
# metrics df
merge_metrics.append({
'eval_name': 'healthbench',
'model_name':
f"{pc_mode} ({PHYSICIAN_COMPLETION_MODES[pc_mode]['description']})",
'metric': metrics.get('overall_score', None),
})
merge_metrics_df = pd.DataFrame(merge_metrics).pivot(index=['model_name'],
columns='eval_name')
print('\nAll results: ')
print(merge_metrics_df.to_markdown())
return merge_metrics
if __name__ == '__main__':
main()
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